PoplarV1, Main, Exploration, bibRecord, 002E60

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica.

Identifieur interne : 002E60 ( Main/Exploration ); précédent : 002E59; suivant : 002E61

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica.

Auteurs : Bosheng Li [République populaire de Chine] ; Yurong Qin ; Hui Duan ; Weilun Yin ; Xinli Xia

Source :

Journal of experimental botany [ 1460-2431 ] ; 2011.

RBID : pubmed:21511902

Descripteurs français

KwdFr :
- ARN des plantes (classification), ARN des plantes (génétique), ARN des plantes (physiologie), Analyse de séquence d'ARN (méthodes), Chine (MeSH), Données de séquences moléculaires (MeSH), Feuilles de plante (génétique), Génome végétal (MeSH), Populus (génétique), Populus (physiologie), Régulation de l'expression des gènes végétaux (MeSH), Stress physiologique (MeSH), Sécheresses (MeSH), Séquence conservée (MeSH), Séquence nucléotidique (MeSH), Séquençage nucléotidique à haut débit (MeSH), Séquençage par oligonucléotides en batterie (MeSH), microARN (classification), microARN (génétique), microARN (physiologie).
MESH :
- classification : ARN des plantes, microARN.
- génétique : ARN des plantes, Feuilles de plante, Populus, microARN.
- méthodes : Analyse de séquence d'ARN.
- physiologie : ARN des plantes, Populus, microARN.
- Chine, Données de séquences moléculaires, Génome végétal, Régulation de l'expression des gènes végétaux, Stress physiologique, Sécheresses, Séquence conservée, Séquence nucléotidique, Séquençage nucléotidique à haut débit, Séquençage par oligonucléotides en batterie.
Wicri :
- geographic : République populaire de Chine.

English descriptors

KwdEn :
- Base Sequence (MeSH), China (MeSH), Conserved Sequence (MeSH), Droughts (MeSH), Gene Expression Regulation, Plant (MeSH), Genome, Plant (MeSH), High-Throughput Nucleotide Sequencing (MeSH), MicroRNAs (classification), MicroRNAs (genetics), MicroRNAs (physiology), Molecular Sequence Data (MeSH), Oligonucleotide Array Sequence Analysis (MeSH), Plant Leaves (genetics), Populus (genetics), Populus (physiology), RNA, Plant (classification), RNA, Plant (genetics), RNA, Plant (physiology), Sequence Analysis, RNA (methods), Stress, Physiological (MeSH).
MESH :
- chemical , classification : MicroRNAs, RNA, Plant.
- chemical , genetics : MicroRNAs, RNA, Plant.
- chemical , physiology : MicroRNAs, RNA, Plant.
- geographic : China.
- genetics : Plant Leaves, Populus.
- methods : Sequence Analysis, RNA.
- physiology : Populus.
- Base Sequence, Conserved Sequence, Droughts, Gene Expression Regulation, Plant, Genome, Plant, High-Throughput Nucleotide Sequencing, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Stress, Physiological.

Abstract

MicroRNAs (miRNAs) are small, non-coding RNAs that play essential roles in plant growth, development, and stress response. Populus euphratica is a typical abiotic stress-resistant woody species. This study presents an efficient method for genome-wide discovery of new drought stress responsive miRNAs in P. euphratica. High-throughput sequencing of P. euphratica leaves found 197 conserved miRNAs between P. euphratica and Populus trichocarpa. Meanwhile, 58 new miRNAs belonging to 38 families were identified, an increase in the number of P. euphratica miRNAs. Twenty-six new and 21 conserved miRNA targets were verified by degradome sequencing, and target annotation showed that these targets were involved in multiple biological processes, including transcriptional regulation and response to stimulus. Furthermore, comparison of high-throughput sequencing with miRNA microarray profiling data indicated that 104 miRNA sequences were up-regulated, whereas 27 were down-regulated under drought stress. This preliminary characterization provides a framework for future analysis of miRNA genes and their roles in key poplar traits such as stress resistance, and could be useful for plant breeding and environmental protection.

DOI: 10.1093/jxb/err051
PubMed: 21511902
PubMed Central: PMC3134338

Affiliations:

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Le document en format XML

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<front><div type="abstract" xml:lang="en">MicroRNAs (miRNAs) are small, non-coding RNAs that play essential roles in plant growth, development, and stress response. Populus euphratica is a typical abiotic stress-resistant woody species. This study presents an efficient method for genome-wide discovery of new drought stress responsive miRNAs in P. euphratica. High-throughput sequencing of P. euphratica leaves found 197 conserved miRNAs between P. euphratica and Populus trichocarpa. Meanwhile, 58 new miRNAs belonging to 38 families were identified, an increase in the number of P. euphratica miRNAs. Twenty-six new and 21 conserved miRNA targets were verified by degradome sequencing, and target annotation showed that these targets were involved in multiple biological processes, including transcriptional regulation and response to stimulus. Furthermore, comparison of high-throughput sequencing with miRNA microarray profiling data indicated that 104 miRNA sequences were up-regulated, whereas 27 were down-regulated under drought stress. This preliminary characterization provides a framework for future analysis of miRNA genes and their roles in key poplar traits such as stress resistance, and could be useful for plant breeding and environmental protection.</div>
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Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica.

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica.

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